alternator wiring 3.0 vs 4.0 and a few other questions about the swap please help

[kiragyu]

1. ok guys i got the 4.0 pretty much installed but was wondering how the pins would line up from a 98 b3k to a 2007 4.0 i know that i will have to take some pins out but would i be able to get a seperate connecters and be able to plug in the matching wires and have it work?

2. ok another question is i didnt get the pats when i got the engine so i have the pcm all hooked up and if i were to turn the key would the pcm even recognize that there is supposed to be pats there? and if not would it run. if i did recognize it was supposed to have pats would i show up on a scan tool and would i be able to route around it?

3. i had thought that a 98 3.0 was returnless well come to find out it has a return line on it or was it a evap line?

thanks to ANYONE who can answer any of these question

 

[kiragyu]

found out it is return less its just an evap line. ok i can get the pats system so i dont need that question answered any more. all i need answered is the alternator one

 

[kiragyu]

found out that truck didnt have pats so another question down can ANYONE help with the alternator question